Rice chloroplast genome
Webb6 apr. 2024 · Rice is a staple food crop for more than half of the world’s population. Many rice-growing regions, especially in South and Southeast Asia, are in flood-prone lowland … Webb10 sep. 2015 · Here we report on the use of whole chloroplast sequences to elucidate the evolutionary and phylogenetic relationships in the AA genome Oryza species, …
Rice chloroplast genome
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Webb11 apr. 2024 · Genome sequencing, assembly, and annotation. The genome size of the haploid line (Supplementary Fig. 1b, d) was estimated to be approximately 8.47~8.88 Gb by K-mer analysis using 1070.20 Gb clean short reads (Supplementary Fig. 2a–d and Supplementary Tables 1 and 2), which was slightly smaller than the size estimated by … Webb17 okt. 2014 · Consensus chloroplast sequences were produced by mapping sequence reads to the reference rice chloroplast genome or by de novo assembly and mapping of …
Webb1 okt. 2024 · The aim of this study was to assemble and study the whole chloroplast genomes from wild populations of A genome rice and use this to determine the genetic … Webb24 maj 2024 · The chloroplast genome structure is characterized by a small genome size with a circular quadripartite structure ranging from 120–165 kb in length, containing a …
Webb6 juni 2003 · Abstract. Rice is the world's most important food crop and a model for cereal research. At 430 megabases in size, its genome is the most compact of the cereals. We … WebbUsing high quality sequence reads extracted from our whole genome shotgun repository, we assembled two chloroplast genome sequences from two rice (Oryza sativa) …
Webb10 mars 2014 · Chloroplast genome assemblies A single run of 454 titanium 7 kb paired end sequencing was conducted on genomic DNA of 11 Triticeae species and subspecies ( Table 1) and additional sequences for T. aestivum were provided by …
Webb9 feb. 2024 · Herein, the complete chloroplast (cp) genome of Catha edulis is reported. This genome is 157,960 bp in length with 37% GC content and is structurally arranged into two 26,577 bp inverted repeats and two single-copy areas. The size of the small single-copy and the large single-copy regions were 18,491 bp and 86,315 bp, respectively. la ayuda mutua kropotkin pdfWebbChloroplast genome nucleotide diversity investigation indicated a high degree of diversity in wild rice than in cultivated rice. Genetic distance estimation revealed that African rice … je2sjhWebb7 dec. 1999 · Clarification of phylogenetic relationships of rice genomes is critical for effective utilization of the wild rice germ plasm. By generating and comparing two … je2tqnWebb3 mars 2024 · In rice, the intersubspecific polymorphism rate for mitochondrial genome is 0.02% for SNPs (single nucleotide polymorphisms) and 0.006% for indels (insertions and deletions) and the... je2uwrWebbChloroplast genome phylogeny of Oryzeae. Phylogenetic tree of aligned chloroplast sequences derived from reference assembly of short-read sequences to cultivated rice Oryza sativa japonica. The same topology was obtained using maximum parsimony (MP) and maximum likelihood (ML) and Bayesian analysis. je2zbzWebb28 feb. 2024 · Chloroplasts, which are important cellular organelles that provide energy to plants, have an independent, circular, double-stranded DNA. The chloroplast genome (plastome), which ranges in size from 110 to 200 kb, … je2ucjWebbThe chloroplast genome (CPG) of Pinus massoniana belonging to the genus Pinus (Pinaceae), which is a primary source of turpentine, was sequenced and analyzed in … je2uff